{
  "_id": "6ac21405773a0037682c1888",
  "Package": "ONEST",
  "Title": "Observers Needed to Evaluate Subjective Tests",
  "Version": "0.1.0",
  "Authors@R": "c(person(\"Gang\", \"Han\", role = c(\"aut\", \"cre\"),\nemail = \"hangang.true@gmail.com\"),\nperson(\"Baihong\", \"Guo\", role = \"aut\", email = \"ragerguo1023@gmail.com\"))",
  "Author": "Gang Han [aut, cre], Baihong Guo [aut]",
  "Maintainer": "Gang Han <hangang.true@gmail.com>",
  "URL": "https://github.com/hangangtrue/ONEST",
  "BugReports": "https://github.com/hangangtrue/ONEST/issues",
  "Description": "This ONEST software implements the method of assessing the\npathologist agreement in reading PD-L1 assays (Reisenbichler et\nal. (2020 <doi:10.1038/s41379-020-0544-x>)), to determine the\nminimum number of evaluators needed to estimate agreement\ninvolving a large number of raters. Input to the program should\nbe binary(1/0) pathology data, where “0” may stand for negative\nand “1” for positive. Additional examples were given using the\ndata from Rimm et al. (2017 <doi:10.1001/jamaoncol.2017.0013>).",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.1.1",
  "VignetteBuilder": "knitr",
  "Repository": "https://hangangtrue.r-universe.dev",
  "Date/Publication": "2021-07-27 14:28:44 UTC",
  "RemoteUrl": "https://github.com/hangangtrue/onest",
  "RemoteRef": "HEAD",
  "RemoteSha": "8011f0c645c6daa64695f3200ccf92e49fa1e5bc",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-04 08:35:11 UTC",
    "User": "root"
  },
  "_user": "hangangtrue",
  "_type": "src",
  "_file": "ONEST_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/e66b3a4889fa8b7ffb2c76c194f556b2e26c862f4ab7a6255ca698b70a12af2f",
  "_filesize": 566508,
  "_sha256": "e66b3a4889fa8b7ffb2c76c194f556b2e26c862f4ab7a6255ca698b70a12af2f",
  "_expires": "2027-01-12T08:53:23.000Z",
  "_created": "2026-10-04T08:35:11.000Z",
  "_published": "2026-10-04T08:53:25.654Z",
  "_jobs": [
    {
      "job": 111398292893,
      "time": 95,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11297508939"
    },
    {
      "job": 111398292957,
      "time": 130,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11298645237"
    },
    {
      "job": 111398292905,
      "time": 149,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11298540917"
    },
    {
      "job": 111398292946,
      "time": 124,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11297884345"
    },
    {
      "job": 111397742687,
      "time": 164,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11297518790"
    },
    {
      "job": 111398292900,
      "time": 87,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11298089438"
    },
    {
      "job": 111398292916,
      "time": 71,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11298535489"
    },
    {
      "job": 111398292931,
      "time": 49,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11298675011"
    },
    {
      "job": 111398292911,
      "time": 58,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11298560391"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/hangangtrue/actions/runs/37189212053",
  "_status": "success",
  "_upstream": "https://github.com/hangangtrue/onest",
  "_commit": {
    "id": "8011f0c645c6daa64695f3200ccf92e49fa1e5bc",
    "author": "hangangtrue <hangang.true@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #3 from baihongguo/ONEST_0.1.0\n\nAdd files via upload",
    "time": 1627396124
  },
  "_maintainer": {
    "name": "Gang Han",
    "email": "hangang.true@gmail.com",
    "login": "hangangtrue",
    "description": "",
    "uuid": 28308827
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "hangangtrue",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "baihongguo",
      "count": 5,
      "uuid": 65776712
    },
    {
      "user": "hangangtrue",
      "count": 4,
      "uuid": 28308827
    }
  ],
  "_userbio": {
    "uuid": 28308827,
    "type": "user",
    "name": "hangangtrue",
    "followers": 1
  },
  "_downloads": {
    "count": 241,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ONEST"
  },
  "_devurl": "https://github.com/hangangtrue/onest",
  "_searchresults": 8,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/ONEST.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/hangangtrue/onest",
  "_realowner": "hangangtrue",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2020-09-07"
    },
    {
      "version": "0.1.0",
      "date": "2021-07-26"
    }
  ],
  "_exports": [
    "ONEST_inflation_test",
    "ONEST_main",
    "ONEST_vignettes",
    "plotline"
  ],
  "_datasets": [
    {
      "name": "empirical",
      "title": "Precomputed dataset",
      "object": "empirical",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 17,
      "table": true,
      "tojson": true
    },
    {
      "name": "NCCN_22c3_t",
      "title": "Example dataset5",
      "object": "NCCN_22c3_t",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13"
      ],
      "rows": 90,
      "table": true,
      "tojson": true
    },
    {
      "name": "NCCN_sp142",
      "title": "Example dataset3",
      "object": "NCCN_sp142",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13"
      ],
      "rows": 90,
      "table": true,
      "tojson": true
    },
    {
      "name": "NCCN_sp142_t",
      "title": "Example dataset4",
      "object": "NCCN_sp142_t",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13"
      ],
      "rows": 90,
      "table": true,
      "tojson": true
    },
    {
      "name": "sp142_bin",
      "title": "Example dataset1",
      "object": "sp142_bin",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13",
        "V14",
        "V15",
        "V16",
        "V17",
        "V18"
      ],
      "rows": 68,
      "table": true,
      "tojson": true
    },
    {
      "name": "sp263_bin",
      "title": "Example dataset2",
      "object": "sp263_bin",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13",
        "V14",
        "V15",
        "V16",
        "V17",
        "V18"
      ],
      "rows": 76,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "empirical",
      "title": "Precomputed dataset",
      "topics": [
        "empirical"
      ]
    },
    {
      "page": "NCCN_22c3_t",
      "title": "Example dataset5",
      "topics": [
        "NCCN_22c3_t"
      ]
    },
    {
      "page": "NCCN_sp142",
      "title": "Example dataset3",
      "topics": [
        "NCCN_sp142"
      ]
    },
    {
      "page": "NCCN_sp142_t",
      "title": "Example dataset4",
      "topics": [
        "NCCN_sp142_t"
      ]
    },
    {
      "page": "ONEST",
      "title": "The R ONEST package",
      "topics": [
        "ONEST"
      ]
    },
    {
      "page": "ONEST_inflation_test",
      "title": "The ONEST_inflation_test",
      "topics": [
        "ONEST_inflation_test"
      ]
    },
    {
      "page": "ONEST_main",
      "title": "ONEST main function",
      "topics": [
        "ONEST_main"
      ]
    },
    {
      "page": "ONEST_vignettes",
      "title": "ONEST vignettes function",
      "topics": [
        "ONEST_vignettes"
      ]
    },
    {
      "page": "plotline",
      "title": "Plotline",
      "topics": [
        "plotline"
      ]
    },
    {
      "page": "sp142_bin",
      "title": "Example dataset1",
      "topics": [
        "sp142_bin"
      ]
    },
    {
      "page": "sp263_bin",
      "title": "Example dataset2",
      "topics": [
        "sp263_bin"
      ]
    }
  ],
  "_readme": "https://github.com/hangangtrue/onest/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "ONEST.Rmd",
      "filename": "ONEST.html",
      "title": "ONEST",
      "author": "Gang Han, Baihong Guo",
      "engine": "knitr::rmarkdown",
      "headings": [
        "1 General Information",
        "2 Model and Inference",
        "3 Inputs and Outputs",
        "3.1 Inputs",
        "3.2 Outputs",
        "4 Example with dataset sp142_bin",
        "4.1 Load data",
        "4.2 Plot the data and get the outputs",
        "4.3 The ONEST score test",
        "4.4 Code to run other examples",
        "References"
      ],
      "created": "2020-08-17 15:10:56",
      "modified": "2021-07-27 14:28:44",
      "commits": 3
    }
  ],
  "_score": 4.176091259055681,
  "_indexed": true,
  "_nocasepkg": "onest",
  "_universes": [
    "hangangtrue"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-04T08:37:23.000Z",
      "distro": "resolute",
      "commit": "8011f0c645c6daa64695f3200ccf92e49fa1e5bc",
      "fileid": "https://r2.ropensci.org/f4263b798c131bf68f0bd54aeffe4754a853045b43aa4561ac3bfa7aa6c591d9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hangangtrue/actions/runs/37189212053"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-04T08:37:23.000Z",
      "distro": "resolute",
      "commit": "8011f0c645c6daa64695f3200ccf92e49fa1e5bc",
      "fileid": "https://r2.ropensci.org/509b2c5c3a562ad57aa763d6976c00851b69b515a15b4c6f4b9a6aa37f39c50e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hangangtrue/actions/runs/37189212053"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-04T08:49:27.000Z",
      "commit": "8011f0c645c6daa64695f3200ccf92e49fa1e5bc",
      "fileid": "https://r2.ropensci.org/4e1a266f69bf31d57a59f4643ad3c763e7658f308ac021249cebf53820412bb7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hangangtrue/actions/runs/37189212053"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-04T08:52:36.000Z",
      "commit": "8011f0c645c6daa64695f3200ccf92e49fa1e5bc",
      "fileid": "https://r2.ropensci.org/271c2b29ba3e3c288381ca2f4adce8f01a1c86ebe1a9bac914f99283a2c01c29",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hangangtrue/actions/runs/37189212053"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-10-04T08:36:51.000Z",
      "commit": "8011f0c645c6daa64695f3200ccf92e49fa1e5bc",
      "fileid": "https://r2.ropensci.org/38c11e76b96e7c9a2f8169cb278dccf5f26602bcd88df4243123e34255276b5f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/hangangtrue/actions/runs/37189212053"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-04T08:36:16.000Z",
      "commit": "8011f0c645c6daa64695f3200ccf92e49fa1e5bc",
      "fileid": "https://r2.ropensci.org/7f560a988e039ada967afd3049a8f862b4452f3348a4dfe11329348de01b8847",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hangangtrue/actions/runs/37189212053"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-04T08:36:03.000Z",
      "commit": "8011f0c645c6daa64695f3200ccf92e49fa1e5bc",
      "fileid": "https://r2.ropensci.org/678df1923b55299a2e4a697d84ce4f51320717a453f99e2ae9b61ab757f3017f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hangangtrue/actions/runs/37189212053"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-04T08:36:07.000Z",
      "commit": "8011f0c645c6daa64695f3200ccf92e49fa1e5bc",
      "fileid": "https://r2.ropensci.org/571f6b073e8471d987f17330da0d60e55177a5cb604e776efbdc12bcb5bc1a25",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hangangtrue/actions/runs/37189212053"
    }
  ]
}