1 General Information | 2 Model and Inference | 3 Inputs and Outputs | 3.1 Inputs | 3.2 Outputs | 4 Example with dataset sp142_bin | 4.1 Load data | 4.2 Plot the data and get the outputs | 4.3 The ONEST score test | 4.4 Code to run other examples | References
Package: ONEST 0.1.0
ONEST: Observers Needed to Evaluate Subjective Tests
This ONEST software implements the method of assessing the pathologist agreement in reading PD-L1 assays (Reisenbichler et al. (2020 <doi:10.1038/s41379-020-0544-x>)), to determine the minimum number of evaluators needed to estimate agreement involving a large number of raters. Input to the program should be binary(1/0) pathology data, where “0” may stand for negative and “1” for positive. Additional examples were given using the data from Rimm et al. (2017 <doi:10.1001/jamaoncol.2017.0013>).
Authors:
ONEST_0.1.0.tar.gz
ONEST_0.1.0.zip(r-4.7-any)ONEST_0.1.0.zip(r-4.6-any)ONEST_0.1.0.zip(r-4.5-any)
ONEST_0.1.0.tgz(r-4.6-any)ONEST_0.1.0.tgz(r-4.5-any)
ONEST_0.1.0.tar.gz(r-4.7-any)ONEST_0.1.0.tar.gz(r-4.6-any)
ONEST_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ONEST/json (API)
| # Install 'ONEST' in R: |
| install.packages('ONEST', repos = c('https://hangangtrue.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hangangtrue/onest/issues
Datasets:
- empirical - Precomputed dataset
- NCCN_22c3_t - Example dataset5
- NCCN_sp142 - Example dataset3
- NCCN_sp142_t - Example dataset4
- sp142_bin - Example dataset1
- sp263_bin - Example dataset2
Last updated from:8011f0c645. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 95 | ||
| source / vignettes | OK | 164 | ||
| linux-release | OK | 130 | ||
| macos-release | OK | 124 | ||
| macos-oldrel | OK | 149 | ||
| windows-devel | OK | 71 | ||
| windows-release | OK | 58 | ||
| windows-oldrel | OK | 49 | ||
| wasm-release | OK | 87 |
Exports:ONEST_inflation_testONEST_mainONEST_vignettesplotline
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Precomputed dataset | empirical |
| Example dataset5 | NCCN_22c3_t |
| Example dataset3 | NCCN_sp142 |
| Example dataset4 | NCCN_sp142_t |
| The R ONEST package | ONEST |
| The ONEST_inflation_test | ONEST_inflation_test |
| ONEST main function | ONEST_main |
| ONEST vignettes function | ONEST_vignettes |
| Plotline | plotline |
| Example dataset1 | sp142_bin |
| Example dataset2 | sp263_bin |